PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G240900.1
Common NamePHAVU_002G240900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 258aa    MW: 28753.1 Da    PI: 4.7906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G240900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-3075133259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers  dp+++++tY+++Hnh+
  Phvul.002G240900.1  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCVDPTMLVVTYSSDHNHP 133
                         69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-3169135IPR003657WRKY domain
SuperFamilySSF1182907.85E-2672135IPR003657WRKY domain
SMARTSM007741.1E-3474134IPR003657WRKY domain
PROSITE profilePS5081131.75575135IPR003657WRKY domain
PfamPF031061.7E-2576133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDTKLTNNNR QDSDPPQENI ADSPPSSSLF NIDAVVTSPT SSSKRRRAIQ KRVVQIPIKE  60
TEGCRLKGES NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSCVDPT  120
MLVVTYSSDH NHPWPASRNN TRPTKKPEPE PVTDPVEPEP EPEEKFAELG GDESMITTAD  180
EMGWLGEMET TTSTVLESPI MSAAYHADVE SALLPMREED ELLFADLGEL PECSVMFRQG  240
LLEERRRYTA PWCGTTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-19751351574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150660.0AP015066.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0022, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159480.10.0hypothetical protein PHAVU_002G240900g
SwissprotQ9LP563e-80WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLV7CMU70.0V7CMU7_PHAVU; Uncharacterized protein
STRINGGLYMA08G12460.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-81WRKY DNA-binding protein 65